Validating your data¶
Use the chap validate command to check that your CSV is Chap-compatible before running an evaluation.
Basic validation¶
e.g chap validate --dataset-csv example_data/laos_subset.csvThis checks for:
- Required columns (
time_period,location) - Missing values (NaN) in covariate columns
- Location completeness (every location has the same set of time periods)
With --model-name, it also checks that the dataset has the covariates and period type the model requires. chap eval warns about these problems and runs anyway; chap eval --strict stops on them.
With --data-configuration, it also checks that no masked range falls in the evaluation window of a backtest, which chap eval refuses. Give the backtest you will run with --backtest-params, and a masked range in its window is an error; in a Chap project, the project's eval settings are used. Without them, chap validate checks the window of chap eval's default backtest and only warns.
Validate GeoJSON (if applicable)¶
If a GeoJSON file with the same base name sits next to your CSV (for example laos_subset.csv and laos_subset.geojson), it is discovered and loaded by the same command. Locations in the CSV without a matching feature in the GeoJSON are logged as a warning and dropped from the loaded dataset; validation does not fail on them, so check the output for that warning.